MaterialSampleRecord

Class: MaterialSampleRecord

Modified

August 19, 2024

This is a data object that is a digital representation of a material sample, and thus shares the same identifier as the physical object. It provides descriptive properties for any iSamples material sample, URI for the metadata record is same as URI for material sample– digital object is considered twin of physical object, a representation. IGSN is recommended. Must be a URI that can be dereferenced on the web.

URI: isam:MaterialSampleRecord

case 4

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classDiagram
    direction RL
    class MaterialSampleRecord {
      alternate_identifiers : IdentifierObject[]
      complies_with : string[]
      curation : MaterialSampleCuration
      dc_rights : string
      description : string
      has_context_category : IdentifierObject[]
      has_material_category : IdentifierObject[]
      has_sample_object_type : IdentifierObject[]
      keywords : Keyword[]
      label : string
      produced_by : SamplingEvent
      registrant : Agent
      related_resource : SampleRelation[]
      sample_identifier : string
      sampling_purpose : string
      
    }
    IdentifierObject --o MaterialSampleRecord : alternate_identifiers
      click IdentifierObject href "IdentifierObject.html" "Documentation"
      
    
    MaterialSampleCuration --o MaterialSampleRecord : curation
      click MaterialSampleCuration href "MaterialSampleCuration.html" "Documentation"
      
    
    
    IdentifierObject --o MaterialSampleRecord : has_context_category
      click IdentifierObject href "IdentifierObject.html" "Documentation"
      
    IdentifierObject --o MaterialSampleRecord : has_material_category
      click IdentifierObject href "IdentifierObject.html" "Documentation"
      
    IdentifierObject --o MaterialSampleRecord : has_sample_object_type
      click IdentifierObject href "IdentifierObject.html" "Documentation"
      
    Keyword --o MaterialSampleRecord : keywords
      click Keyword href "Keyword.html" "Documentation"
      
    
    SamplingEvent --o MaterialSampleRecord : produced_by
      click SamplingEvent href "SamplingEvent.html" "Documentation"
      
    Agent --o MaterialSampleRecord : registrant
      click Agent href "Agent.html" "Documentation"
      
    SampleRelation --o MaterialSampleRecord : related_resource
      click SampleRelation href "SampleRelation.html" "Documentation"
      
    
    
    
    
    
    
    
    
    
    
    
    
    MaterialSampleRecord --o SamplingEvent : authorized_by
       click SamplingEvent href "SamplingEvent.html" "Documentation"

Slots

Slots in class MaterialSampleRecord.
Name Cardinality and Range Description Inheritance
sample_identifier 1..1
xsd:string		 URI that identifies the material sample described by this record
direct
label 1..1
xsd:string		 A human intelligible string used to identify a thing, i.e. the name to use for the thing; should be unique in the scope of a sample collection or dataset.
direct
description 0..1
xsd:string		 Free text description of the subject of a triple.
direct
alternate_identifiers 0..*
IdentifierObject		 One or more identifiers used to identify the sample in other contexts. In this context, the identifier property and scheme_name should be required.
direct
produced_by 0..1
SamplingEvent		 Object that documents the sampling event–who, where, when the material sample was obtained.
direct
sampling_purpose 0..1
xsd:string		 Term to specify why a sample was collection.
direct
has_context_category 0..*
IdentifierObject		 Top level context, based on the kind of feature sampled. Specific identification of the sampled feature of interest is done through the SamplingEvent/Feature of Interest property. At least one value is an instance of skos:Concept from the iSamples sampledfeaturevocabulary.
direct
has_material_category 0..*
IdentifierObject		 The kind of material that constitutes the sample. At least one value is an instance of skos:Concept from the iSamples MaterialTypeVocabulary. Extension vocabularies can be used for more precise categorization.
direct
has_sample_object_type 0..*
IdentifierObject		 The kind of object the material sample is. At least one value is an instance of skos:Concept from the iSamples materialsampleobjecttype Vocabulary; extension vocabularies can be used for more precise categorization.
direct
keywords 0..*
Keyword		 Free text terms or formal categories associate with sample to support discovery. As in DataCite metadata, each keyword is a separate element. Multiple keywords should NOT be included as a comma-delimited list.
direct
related_resource 0..*
SampleRelation		 Link to related resource with relationship property to indicate nature of connection. Target should be identifier for a resource.
direct
complies_with 0..*
xsd:string		 A list of policies, recommendations, best practices (etc.) that have been followed in the collection and curation of the sample.
direct
dc_rights 0..1
xsd:string		 A statement about various property rights associated with the resource, including intellectual property rights. Recommended practice is to refer to a rights statement with a URI. If this is not possible or feasible, a literal value (name, label, or short text) may be provided.
direct
curation 0..1
MaterialSampleCuration		 Information about the current storage of sample, access to sample, and events in curation history. Curation as used here starts when the sample is removed from its original context, and might include various processing steps for preservation. Processing related to analysis preparation such as crushing, dissolution, evaporation, filtering are considered part of the sampling method for the derived child sample.
direct
registrant 0..1
Agent		 Identification of the agent that registered the sample, with contact information. Should include person name and affiliation, or position name and affiliation, or just organization name. e-mail address is preferred contact information.
direct

Usages

used by used in type used
MaterialSampleRecord sample_identifier domain MaterialSampleRecord
MaterialSampleRecord produced_by domain MaterialSampleRecord
MaterialSampleRecord sampling_purpose domain MaterialSampleRecord
MaterialSampleRecord has_context_category domain MaterialSampleRecord
MaterialSampleRecord has_material_category domain MaterialSampleRecord
MaterialSampleRecord has_sample_object_type domain MaterialSampleRecord
MaterialSampleRecord keywords domain MaterialSampleRecord
MaterialSampleRecord complies_with domain MaterialSampleRecord
MaterialSampleRecord registrant domain MaterialSampleRecord
SamplingEvent authorized_by domain MaterialSampleRecord

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/isample/schema/1.0

Mappings

Mapping Type Mapped Value
self [‘isam:MaterialSampleRecord’]
native [‘isam:MaterialSampleRecord’]

LinkML Source

Direct

name: MaterialSampleRecord
description: 'This is a data object that is a digital representation of a material
  sample, and thus shares the same identifier as the physical object. It provides
  descriptive properties for any iSamples material sample, URI for the metadata record
  is same as URI for material sample-- digital object is considered twin of physical
  object, a representation. IGSN is recommended. Must be a URI that can be dereferenced
  on the web.

  '
from_schema: https://w3id.org/isample/schema/1.0
rank: 1000
slots:
- sample_identifier
- label
- description
- alternate_identifiers
- produced_by
- sampling_purpose
- has_context_category
- has_material_category
- has_sample_object_type
- keywords
- related_resource
- complies_with
- dc_rights
- curation
- registrant
slot_usage:
  label:
    name: label
    required: true
  sample_identifier:
    name: sample_identifier
    required: true

Induced

name: MaterialSampleRecord
description: 'This is a data object that is a digital representation of a material
  sample, and thus shares the same identifier as the physical object. It provides
  descriptive properties for any iSamples material sample, URI for the metadata record
  is same as URI for material sample-- digital object is considered twin of physical
  object, a representation. IGSN is recommended. Must be a URI that can be dereferenced
  on the web.

  '
from_schema: https://w3id.org/isample/schema/1.0
rank: 1000
slot_usage:
  label:
    name: label
    required: true
  sample_identifier:
    name: sample_identifier
    required: true
attributes:
  sample_identifier:
    name: sample_identifier
    description: 'URI that identifies the material sample described by this record

      '
    from_schema: https://w3id.org/isample/schema/1.0
    close_mappings:
    - sdo:identifier
    domain: MaterialSampleRecord
    alias: sample_identifier
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: string
    required: true
  label:
    name: label
    description: 'A human intelligible string used to identify a thing, i.e. the name
      to use for the thing; should be unique in the scope of a sample collection or
      dataset.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    close_mappings:
    - rdfs:label
    alias: label
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    - IdentifierObject
    - SamplingSite
    - SamplingEvent
    - MaterialSampleCuration
    - SampleRelation
    range: string
    required: true
  description:
    name: description
    description: 'Free text description of the subject of a triple.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    close_mappings:
    - dct:description
    alias: description
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    - SamplingSite
    - SamplingEvent
    - MaterialSampleCuration
    - SampleRelation
    range: string
  alternate_identifiers:
    name: alternate_identifiers
    description: 'One or more identifiers used to identify the sample in other contexts.
      In this context, the identifier property and scheme_name should be required.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    alias: alternate_identifiers
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: IdentifierObject
    multivalued: true
  produced_by:
    name: produced_by
    description: 'Object that documents the sampling event--who, where, when the material
      sample was obtained.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    domain: MaterialSampleRecord
    alias: produced_by
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: SamplingEvent
  sampling_purpose:
    name: sampling_purpose
    description: 'Term to specify why a sample was collection.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    domain: MaterialSampleRecord
    alias: sampling_purpose
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: string
  has_context_category:
    name: has_context_category
    description: 'Top level context, based on the kind of feature sampled. Specific
      identification of the sampled feature of interest is done through the SamplingEvent/Feature
      of Interest property. At least one value is an instance of skos:Concept from
      the iSamples sampledfeaturevocabulary.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    domain: MaterialSampleRecord
    alias: has_context_category
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: IdentifierObject
    multivalued: true
  has_material_category:
    name: has_material_category
    description: 'The kind of material that constitutes the sample.  At least one
      value is an instance of skos\:Concept from the iSamples MaterialTypeVocabulary.
      Extension vocabularies can be used for more precise categorization.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    domain: MaterialSampleRecord
    alias: has_material_category
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: IdentifierObject
    multivalued: true
  has_sample_object_type:
    name: has_sample_object_type
    description: 'The kind of object the material sample is. At least one value is
      an instance of skos\:Concept from the iSamples materialsampleobjecttype Vocabulary;
      extension vocabularies can be used for more precise categorization.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    domain: MaterialSampleRecord
    alias: has_sample_object_type
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: IdentifierObject
    multivalued: true
  keywords:
    name: keywords
    description: 'Free text terms or formal categories associate with sample to support
      discovery. As in DataCite metadata, each keyword is a separate element. Multiple
      keywords should NOT be included as a comma-delimited list.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    close_mappings:
    - sdo:keywords
    - datacite:subjects
    domain: MaterialSampleRecord
    alias: keywords
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: Keyword
    multivalued: true
  related_resource:
    name: related_resource
    description: 'Link to related resource with relationship property to indicate
      nature of connection. Target should be identifier for a resource.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    alias: related_resource
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: SampleRelation
    multivalued: true
  complies_with:
    name: complies_with
    description: 'A list of policies, recommendations, best practices (etc.) that
      have been followed in the collection and curation of the sample.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    domain: MaterialSampleRecord
    alias: complies_with
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: string
    multivalued: true
  dc_rights:
    name: dc_rights
    description: 'A statement about various property rights associated with the resource,
      including intellectual property rights. Recommended practice is to refer to
      a rights statement with a URI. If this is not possible or feasible, a literal
      value (name, label, or short text) may be provided.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    close_mappings:
    - dct:rights
    alias: dc_rights
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: string
  curation:
    name: curation
    description: 'Information about the current storage of sample, access to sample,
      and events in curation history. Curation as used here starts when the sample
      is removed from its original context, and might include various processing steps
      for preservation.  Processing related to analysis preparation such as crushing,
      dissolution, evaporation, filtering are considered part of the sampling method
      for the derived child sample.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    alias: curation
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: MaterialSampleCuration
  registrant:
    name: registrant
    description: 'Identification of the agent that registered the sample, with contact
      information. Should include person name and affiliation, or position name and
      affiliation, or just organization name. e-mail address is preferred contact
      information.

      '
    from_schema: https://w3id.org/isample/schema/1.0
    domain: MaterialSampleRecord
    alias: registrant
    owner: MaterialSampleRecord
    domain_of:
    - MaterialSampleRecord
    range: Agent